Publications

The laboratories involved in the DYNAMO programme have produced over 400 publications since 2012, with 20% in high-impact journals (Impact Factor > 11) and a dozen patents and licences. For the 80 publications woth an impact factor > 11, over 60% resulted from international collaborations with over 100 international laboratories (>50 from Europe) including some prestigious institutions like the University of Chicago (USA), University of Cambridge (UK), the Max Plack Institute and the Ludwig Maximilians University Munich (Germany), the National Cancer Institute, NIH (USA), the Icahn School of Medicine at Mount Sinai, New York (USA), the University of Liège (Belgium), Okayama University (Japan), the University of Wisconsin-Madison (USA), the University of British Columbia in Vancouver (Canada)

Alsayyah, Cynthia, Oznur Ozturk, Laetitia Cavellini, Naïma Belgareh-Touzé, and Mickael M. Cohen. 2020. “The Regulation of Mitochondrial Homeostasis by the Ubiquitin Proteasome System.” Biochimica et Biophysica Acta (BBA) - Bioenergetics 1861 (12): 148302. https://doi.org/10.1016/j.bbabio.2020.148302.
Beauzamy, Léna, Jérôme Delacotte, Benjamin Bailleul, Kenya Tanaka, Shuji Nakanishi, Francis-André Wollman, and Frédéric Lemaître. 2020. “Mediator-Microorganism Interaction in Microbial Solar Cell: A Fluo-Electrochemical Insight.” Analytical Chemistry 92 (11): 7532–39. https://doi.org/10.1021/acs.analchem.9b05808.
Beauzamy, Léna, Frédéric Lemaître, and Julien Derr. 2020. “Underlying Mechanisms in Microbial Solar Cells: How Modeling Can Help.” Sustainable Energy & Fuels 4 (12): 6004–10. https://doi.org/10.1039/D0SE01304H.
Bimai, Ornella, Simon Arragain, and Béatrice Golinelli-Pimpaneau. 2020. “Structure-Based Mechanistic Insights into Catalysis by TRNA Thiolation Enzymes.” Current Opinion in Structural Biology 65 (December): 69–78. https://doi.org/10.1016/j.sbi.2020.06.002.
Bujaldon, Sandrine, Natsumi Kodama, Mithun Kumar Rathod, Nicolas Tourasse, Shin-Ichiro Ozawa, Julien Sellés, Olivier Vallon, Yuichiro Takahashi, and Francis-André Wollman. 2020. “The BF4 and P71 Antenna Mutants from Chlamydomonas Reinhardtii.” Biochimica Et Biophysica Acta. Bioenergetics 1861 (4): 148085. https://doi.org/10.1016/j.bbabio.2019.148085.
Cai, Yiming, Ben Usher, Claude Gutierrez, Anastasia Tolcan, Moise Mansour, Peter C. Fineran, Ciarán Condon, Olivier Neyrolles, Pierre Genevaux, and Tim R. Blower. 2020. “A Nucleotidyltransferase Toxin Inhibits Growth of Mycobacterium Tuberculosis through Inactivation of TRNA Acceptor Stems.” Science Advances 6 (31): eabb6651. https://doi.org/10.1126/sciadv.abb6651.
Caspari, Oliver D. 2020. “Introduction of a Leaky Stop Codon as Molecular Tool in Chlamydomonas Reinhardtii.” PLOS ONE 15 (8): e0237405. https://doi.org/10.1371/journal.pone.0237405.
Catala, Marjorie, Alexandre Gato, Carine Tisné, and Pierre Barraud. 2020. “1H, 15N Chemical Shift Assignments of the Imino Groups of Yeast TRNAPhe: Influence of the Post-Transcriptional Modifications.” Biomolecular NMR Assignments, April. https://doi.org/10.1007/s12104-020-09939-6.
Catala, M., A. Gato, C. Tisné, and P. Barraud. 2020. “Yeast TRNAPhe Samples Preparation for NMR Spectroscopy.” Bio-Protocol In Press.
Cavaiuolo, Marina, Carine Chagneau, Soumaya Laalami, and Harald Putzer. 2020. “Impact of RNase E and RNase J on Global MRNA Metabolism in the Cyanobacterium Synechocystis PCC6803.” Frontiers in Microbiology 11. https://doi.org/10.3389/fmicb.2020.01055.
Carpentier, Félix de, Jeanne Le Peillet, Nicolas D. Boisset, Pierre Crozet, Stéphane D. Lemaire, and Antoine Danon. 2020. “Blasticidin S Deaminase: A New Efficient Selectable Marker for Chlamydomonas Reinhardtii.” Frontiers in Plant Science 11. https://doi.org/10.3389/fpls.2020.00242.
Derreumaux, Philippe, Viet Hoang Man, Junmei Wang, and Phuong H. Nguyen. 2020. “Tau R3–R4 Domain Dimer of the Wild Type and Phosphorylated Ser356 Sequences. I. In Solution by Atomistic Simulations.” The Journal of Physical Chemistry B 124 (15): 2975–83. https://doi.org/10.1021/acs.jpcb.0c00574.
Dezaire, Ambre, Christophe H. Marchand, Marine Vallet, Nathalie Ferrand, Soraya Chaouch, Elisabeth Mouray, Annette K. Larsen, et al. 2020. “Secondary Metabolites from the Culture of the Marine-Derived Fungus Paradendryphiella Salina PC 362H and Evaluation of the Anticancer Activity of Its Metabolite Hyalodendrin.” Marine Drugs 18 (4): 191. https://doi.org/10.3390/md18040191.
Duboué-Dijon, E., M. Javanainen, P. Delcroix, P. Jungwirth, and H. Martinez-Seara. 2020. “A Practical Guide to Biologically Relevant Molecular Simulations with Charge Scaling for Electronic Polarization.” The Journal of Chemical Physics 153 (5): 050901. https://doi.org/10.1063/5.0017775.
Exner, Thomas E., Stefanie Becker, Simon Becker, Audrey Boniface-Guiraud, Philippe Delepelaire, Kay Diederichs, and Wolfram Welte. 2020. “Binding of HasA by Its Transmembrane Receptor HasR Follows a Conformational Funnel Mechanism.” European Biophysics Journal: EBJ 49 (1): 39–57. https://doi.org/10.1007/s00249-019-01411-1.
Falciatore, Angela, Marianne Jaubert, Jean-Pierre Bouly, Benjamin Bailleul, and Thomas Mock. 2020. “Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity.” The Plant Cell 32 (3): 547–72. https://doi.org/10.1105/tpc.19.00158.
Garrido, Clotilde, Oliver D. Caspari, Yves Choquet, Francis-André Wollman, and Ingrid Lafontaine. 2020. “Evidence Supporting an Antimicrobial Origin of Targeting Peptides to Endosymbiotic Organelles.” Cells 9 (8): 1795. https://doi.org/10.3390/cells9081795.
Gilet, Jules, Romain Conte, Claire Torchet, Lionel Benard, and Ingrid Lafontaine. 2020. “Additional Layer of Regulation via Convergent Gene Orientation in Yeasts.” Molecular Biology and Evolution 37 (2): 365–78. https://doi.org/10.1093/molbev/msz221.
Giusti, Fabrice, Marina Casiraghi, Elodie Point, Marjorie Damian, Jutta Rieger, Christel Le Bon, Alexandre Pozza, Karine Moncoq, Jean-Louis Banères, and Laurent J. Catoire. 2020. “Structure of the Agonist 12–HHT in Its BLT2 Receptor-Bound State.” Scientific Reports 10 (1): 1–13. https://doi.org/10.1038/s41598-020-59571-6.
Hamouche, Lina, Cyrille Billaudeau, Anna Rocca, Arnaud Chastanet, Saravuth Ngo, Soumaya Laalami, and Harald Putzer. 2020. “Dynamic Membrane Localization of RNase Y in Bacillus Subtilis.” MBio 11 (1). https://doi.org/10.1128/mBio.03337-19.
Henninger, Erin, and Maria T Teixeira. 2020. “Telomere-Driven Mutational Processes in Yeast.” Current Opinion in Genetics & Development, Cancer Genomics, 60 (February): 99–106. https://doi.org/10.1016/j.gde.2020.02.018.
Ignatov, Dmitriy, Karolis Vaitkevicius, Sylvain Durand, Laty Cahoon, Stefanie S. Sandberg, Xijia Liu, Birgitte H. Kallipolitis, et al. 2020. “An MRNA-MRNA Interaction Couples Expression of a Virulence Factor and Its Chaperone in Listeria Monocytogenes.” Cell Reports 30 (12): 4027-4040.e7. https://doi.org/10.1016/j.celrep.2020.03.006.
Katava, M., M. Marchi, D. Madern, M. Sztucki, M. Maccarini, and F. Sterpone. 2020. “Temperature Unmasks Allosteric Propensity in a Thermophilic Malate Dehydrogenase via Dewetting and Collapse.” The Journal of Physical Chemistry B 124 (6): 1001–8. https://doi.org/10.1021/acs.jpcb.9b10776.
Kawasaki, Takayasu, Viet Hoang Man, Yasunobu Sugimoto, Nobuyuki Sugiyama, Hiroko Yamamoto, Koichi Tsukiyama, Junmei Wang, Philippe Derreumaux, and Phuong H. Nguyen. 2020. “Infrared Laser-Induced Amyloid Fibril Dissociation: A Joint Experimental/Theoretical Study on the GNNQQNY Peptide.” The Journal of Physical Chemistry B 124 (29): 6266–77. https://doi.org/10.1021/acs.jpcb.0c05385.
Laureanti, Joseph, Juan Brandi, Elvis Offor, David Engel, Robert Rallo, Bojana Ginovska, Xavier Martinez, Marc Baaden, and Nathan A. Baker. 2020. “Visualizing Biomolecular Electrostatics in Virtual Reality with UnityMol-APBS.” Protein Science: A Publication of the Protein Society 29 (1): 237–46. https://doi.org/10.1002/pro.3773.
Lejars, Maxence, and Eliane Hajnsdorf. 2020. “The World of AsRNAs in Gram-Negative and Gram-Positive Bacteria.” Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms 1863 (2): 194489. https://doi.org/10.1016/j.bbagrm.2020.194489.
Marconnet, Anaïs, Baptiste Michon, Christel Le Bon, Fabrice Giusti, Christophe Tribet, and Manuela Zoonens. 2020. “Solubilization and Stabilization of Membrane Proteins by Cycloalkane-Modified Amphiphilic Polymers.” Biomacromolecules, June. https://doi.org/10.1021/acs.biomac.0c00929.
Martinez, Xavier, Matthieu Chavent, and Marc Baaden. 2020. “Visualizing Protein Structures — Tools and Trends.” Biochemical Society Transactions 48 (2): 499–506. https://doi.org/10.1042/BST20190621.
Martins, Laura, Johannes Knuesting, Laetitia Bariat, Avilien Dard, Sven A. Freibert, Christophe Marchand, David Young, et al. 2020. “Redox Modification of the Fe-S Glutaredoxin GRXS17 Activates Holdase Activity and Protects Plants from Heat Stress.” Plant Physiology, January. https://doi.org/10.1104/pp.20.00906.
Migliore, Mattia, Andrea Bonvicini, Vincent Tognetti, Laure Guilhaudis, Marc Baaden, Hassan Oulyadi, Laurent Joubert, and Isabelle Ségalas-Milazzo. 2020. “Characterization of β-Turns by Electronic Circular Dichroism Spectroscopy: A Coupled Molecular Dynamics and Time-Dependent Density Functional Theory Computational Study.” Physical Chemistry Chemical Physics 22 (3): 1611–23. https://doi.org/10.1039/C9CP05776E.
Navickas, Albertas, Sébastien Chamois, Rénette Saint-Fort, Julien Henri, Claire Torchet, and Lionel Benard. 2020. “No-Go Decay MRNA Cleavage in the Ribosome Exit Tunnel Produces 5′-OH Ends Phosphorylated by Trl1.” Nature Communications 11 (1): 122. https://doi.org/10.1038/s41467-019-13991-9.
Ngo, Son Tung, Phuong H. Nguyen, and Philippe Derreumaux. 2020. “Impact of A2T and D23N Mutations on Tetrameric Aβ42 Barrel within a Dipalmitoylphosphatidylcholine Lipid Bilayer Membrane by Replica Exchange Molecular Dynamics.” The Journal of Physical Chemistry B 124 (7): 1175–82. https://doi.org/10.1021/acs.jpcb.9b11881.
Nguyen, Phuong H., and Philippe Derreumaux. 2020. “Structures of the Intrinsically Disordered Aβ, Tau and α-Synuclein Proteins in Aqueous Solution from Computer Simulations.” Biophysical Chemistry 264 (September): 106421. https://doi.org/10.1016/j.bpc.2020.106421.
Nguyen, Phuong H., Fabio Sterpone, and Philippe Derreumaux. 2020. “Chapter Nine - Aggregation of Disease-Related Peptides.” In Progress in Molecular Biology and Translational Science, edited by Birgit Strodel and Bogdan Barz, 170:435–60. Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly. Academic Press. https://doi.org/10.1016/bs.pmbts.2019.12.002.
Ozawa, Shin-Ichiro, Marina Cavaiuolo, Domitille Jarrige, Richard Kuras, Mark Rutgers, Stephan Eberhard, Dominique Drapier, Francis-André Wollman, and Yves Choquet. 2020. “The OPR Protein MTHI1 Controls the Expression of Two Different Subunits of ATP Synthase CFo in Chlamydomonas Reinhardtii.” The Plant Cell 32 (4): 1179–1203. https://doi.org/10.1105/tpc.19.00770.
Robescu, Marina Simona, Rudy Rubini, Elisa Beneventi, Michele Tavanti, Chiara Lonigro, Francesca Zito, Francesco Filippini, Laura Cendron, and Elisabetta Bergantino. 2020. “From the Amelioration of a NADP+-Dependent Formate Dehydrogenase to the Discovery of a New Enzyme: Round Trip from Theory to Practice.” ChemCatChem n/a (n/a). https://doi.org/10.1002/cctc.201902089.
Röder, Konstantin, Guillaume Stirnemann, Anne-Catherine Dock-Bregeon, David J Wales, and Samuela Pasquali. 2020. “Structural Transitions in the RNA 7SK 5′ Hairpin and Their Effect on HEXIM Binding.” Nucleic Acids Research 48 (1): 373–89. https://doi.org/10.1093/nar/gkz1071.
Royes, Jorge, Valérie Biou, Nathalie Dautin, Christophe Tribet, and Bruno Miroux. 2020. “Inducible Intracellular Membranes: Molecular Aspects and Emerging Applications.” Microbial Cell Factories 19 (1): 176. https://doi.org/10.1186/s12934-020-01433-x.
Signetti, Laurie, Nelli Elizarov, Méliné Simsir, Agnès Paquet, Dominique Douguet, Fabien Labbal, Delphine Debayle, et al. 2020. “Inhibition of Patched Drug Efflux Increases Vemurafenib Effectiveness against Resistant BrafV600E Melanoma.” Cancers 12 (6). https://doi.org/10.3390/cancers12061500.
Šiková, Michaela, Jana Wiedermannová, Martin Převorovský, Ivan Barvík, Petra Sudzinová, Olga Kofroňová, Oldřich Benada, Hana Šanderová, Ciarán Condon, and Libor Krásný. 2020. “The Torpedo Effect in Bacillus Subtilis: RNase J1 Resolves Stalled Transcription Complexes.” The EMBO Journal 39 (3): e102500. https://doi.org/10.15252/embj.2019102500.
Tifrea, Delia F., Sukumar Pal, Christel le Bon, Melanie J. Cocco, Manuela Zoonens, and Luis M. de la Maza. 2020. “Improved Protection against Chlamydia Muridarum Using the Native Major Outer Membrane Protein Trapped in Resiquimod-Carrying Amphipols and Effects in Protection with Addition of a Th1 (CpG-1826) and a Th2 (Montanide ISA 720) Adjuvant.” Vaccine 38 (28): 4412–22. https://doi.org/10.1016/j.vaccine.2020.04.065.
Timr, Stepan, David Gnutt, Simon Ebbinghaus, and Fabio Sterpone. 2020. “The Unfolding Journey of Superoxide Dismutase 1 Barrels under Crowding: Atomistic Simulations Shed Light on Intermediate States and Their Interactions with Crowders.” The Journal of Physical Chemistry Letters 11 (10): 4206–12. https://doi.org/10.1021/acs.jpclett.0c00699.
Timr, Stepan, Dominique Madern, and Fabio Sterpone. 2020. “Chapter Six - Protein Thermal Stability.” In Progress in Molecular Biology and Translational Science, edited by Birgit Strodel and Bogdan Barz, 170:239–72. Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly. Academic Press. https://doi.org/10.1016/bs.pmbts.2019.12.007.
Trinquier, Aude, Sylvain Durand, Frédérique Braun, and Ciarán Condon. 2020. “Regulation of RNA Processing and Degradation in Bacteria.” Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms 1863 (5): 194505. https://doi.org/10.1016/j.bbagrm.2020.194505.
Vo, Chau-Duy-Tam, Julie Michaud, Sylvie Elsen, Bruno Faivre, Emmanuelle Bouveret, Frédéric Barras, Marc Fontecave, Fabien Pierrel, Murielle Lombard, and Ludovic Pelosi. 2020. “The O2-Independent Pathway of Ubiquinone Biosynthesis Is Essential for Denitrification in Pseudomonas Aeruginosa.” BioRxiv, March, 2020.03.22.002311. https://doi.org/10.1101/2020.03.22.002311.
Zhou, Jingjing, Ludovic Pecqueur, Agota Aučynaitė, Jonathan Fuchs, Rasa Rutkienė, Justas Vaitekūnas, Rolandas Meškys, et al. 2020. “Structural Evidence for a [4Fe-5S] Intermediate in the Non-Redox Desulfuration of Thiouracil.” Angewandte Chemie International Edition n/a (n/a). https://doi.org/10.1002/anie.202011211.

Asadi-Atoi, Paria, Pierre Barraud, Carine Tisne, and Stefanie Kellner. 2019. “Benefits of Stable Isotope Labeling in RNA Analysis.” Biological Chemistry 400 (7): 847–65. https://doi.org/10.1515/hsz-2018-0447.
Baaden, Marc. 2019. “Visualizing Biological Membrane Organization and Dynamics.” Journal of Molecular Biology 431 (10): 1889–1919. https://doi.org/10.1016/j.jmb.2019.02.018.
Barraud, Pierre, and Carine Tisné. 2019. “To Be or Not to Be Modified: Miscellaneous Aspects Influencing Nucleotide Modifications in TRNAs.” IUBMB Life 71 (8): 1126–40. https://doi.org/10.1002/iub.2041.
Barraud, Pierre, Alexandre Gato, Matthias Heiss, Marjorie Catala, Stefanie Kellner, and Carine Tisné. 2019. “Time-Resolved NMR Monitoring of TRNA Maturation.” Nature Communications 10 (1): 3373. https://doi.org/10.1038/s41467-019-11356-w.
Barroso da Silva, Fernando Luís, Fabio Sterpone, and Philippe Derreumaux. 2019. “OPEP6: A New Constant-PH Molecular Dynamics Simulation Scheme with OPEP Coarse-Grained Force Field.” Journal of Chemical Theory and Computation 15 (6): 3875–88. https://doi.org/10.1021/acs.jctc.9b00202.
Bou-Nader, Charles, Ludovic Pecqueur, Pierre Barraud, Marc Fontecave, Carine Tisné, Sophie Sacquin-Mora, and Djemel Hamdane. 2019. “Conformational Stability Adaptation of a Double-Stranded RNA-Binding Domain to Transfer RNA Ligand.” Biochemistry 58 (20): 2463–73. https://doi.org/10.1021/acs.biochem.9b00111.
Bou-Nader, Charles, Pierre Barraud, Ludovic Pecqueur, Javier Pérez, Christophe Velours, William Shepard, Marc Fontecave, Carine Tisné, and Djemel Hamdane. 2019. “Molecular Basis for Transfer RNA Recognition by the Double-Stranded RNA-Binding Domain of Human Dihydrouridine Synthase 2.” Nucleic Acids Research 47 (6): 3117–26. https://doi.org/10.1093/nar/gky1302.
Boyer, Benjamin, Claudia Danilowicz, Mara Prentiss, and Chantal Prévost. 2019. “Weaving DNA Strands: Structural Insight on ATP Hydrolysis in RecA-Induced Homologous Recombination.” Nucleic Acids Research 47 (15): 7798–7808. https://doi.org/10.1093/nar/gkz667.
Brandner, Astrid, Dario De Vecchis, Marc Baaden, Mickael M. Cohen, and Antoine Taly. 2019. “Physics-Based Oligomeric Models of the Yeast Mitofusin Fzo1 at the Molecular Scale in the Context of Membrane Docking.” Mitochondrion 49: 234–44. https://doi.org/10.1016/j.mito.2019.06.010.
Brandner, Astrid, Dario De Vecchis, Marc Baaden, Mickael M. Cohen, and Antoine Taly. 2019. “Structural Dataset from Microsecond-Long Simulations of Yeast Mitofusin Fzo1 in the Context of Membrane Docking.” Data in Brief 26 (October): 104460. https://doi.org/10.1016/j.dib.2019.104460.
Caillet, Joël, Bruno Baron, Irina V. Boni, Célia Caillet-Saguy, and Eliane Hajnsdorf. 2019. “Identification of Protein-Protein and Ribonucleoprotein Complexes Containing Hfq.” Scientific Reports 9 (1): 14054. https://doi.org/10.1038/s41598-019-50562-w.
Casiraghi, Marina, Elodie Point, Alexandre Pozza, Karine Moncoq, Jean-Louis Banères, and Laurent J. Catoire. 2019. “NMR Analysis of GPCR Conformational Landscapes and Dynamics.” Molecular and Cellular Endocrinology 484: 69–77. https://doi.org/10.1016/j.mce.2018.12.019.
Chiricotto, Mara, Simone Melchionna, Philippe Derreumaux, and Fabio Sterpone. 2019. “Multiscale Aggregation of the Amyloid Aβ16-22 Peptide: From Disordered Coagulation and Lateral Branching to Amorphous Prefibrils.” The Journal of Physical Chemistry Letters 10 (7): 1594–99. https://doi.org/10.1021/acs.jpclett.9b00423.
Dautant, Alain, Julien Henri, Thomas E. Wales, Philippe Meyer, John R. Engen, and Florian Georgescauld. 2019. “Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-Ray Structure and H/D Exchange.” Biochemistry 58 (10): 1440–49. https://doi.org/10.1021/acs.biochem.8b01308.
Carpentier, Félix de, Stéphane D. Lemaire, and Antoine Danon. 2019. “When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses.” Cells 8 (11). https://doi.org/10.3390/cells8111307.
De Mia, Marcello, Stéphane D. Lemaire, Yves Choquet, and Francis-André Wollman. 2019. “Nitric Oxide Remodels the Photosynthetic Apparatus upon S-Starvation in Chlamydomonas Reinhardtii.” Plant Physiology 179 (2): 718–31. https://doi.org/10.1104/pp.18.01164.
De Vecchis, Dario, Astrid Brandner, Marc Baaden, Mickael M. Cohen, and Antoine Taly. 2019. “A Molecular Perspective on Mitochondrial Membrane Fusion: From the Key Players to Oligomerization and Tethering of Mitofusin.” The Journal of Membrane Biology 252 (4–5): 293–306. https://doi.org/10.1007/s00232-019-00089-y.
Dégut, Clément, Martine Roovers, Pierre Barraud, Franck Brachet, André Feller, Valéry Larue, Abdalla Al Refaii, Joël Caillet, Louis Droogmans, and Carine Tisné. 2019. “Structural Characterization of B. Subtilis M1A22 TRNA Methyltransferase TrmK: Insights into TRNA Recognition.” Nucleic Acids Research 47 (9): 4736–50. https://doi.org/10.1093/nar/gkz230.
Delepelaire, Philippe. 2019. “Bacterial ABC Transporters of Iron Containing Compounds.” Research in Microbiology 170 (8): 345–57. https://doi.org/10.1016/j.resmic.2019.10.008.
Eberhard, Stephan, Sona Valuchova, Julie Ravat, Jaroslav Fulneček, Pascale Jolivet, Sandrine Bujaldon, Stéphane D. Lemaire, et al. 2019. “Molecular Characterization of Chlamydomonas Reinhardtii Telomeres and Telomerase Mutants.” Life Science Alliance 2 (3). https://doi.org/10.26508/lsa.201900315.
Esmenjaud, Jean-Baptiste, David Stroebel, Kelvin Chan, Teddy Grand, Mélissa David, Lonnie P. Wollmuth, Antoine Taly, and Pierre Paoletti. 2019. “An Inter-Dimer Allosteric Switch Controls NMDA Receptor Activity.” The EMBO Journal 38 (2). https://doi.org/10.15252/embj.201899894.
F Brandner, Astrid, Stepan Timr, Simone Melchionna, Philippe Derreumaux, Marc Baaden, and Fabio Sterpone. 2019. “Modelling Lipid Systems in Fluid with Lattice Boltzmann Molecular Dynamics Simulations and Hydrodynamics.” Scientific Reports 9 (1): 16450. https://doi.org/10.1038/s41598-019-52760-y.
Fernandez, Marion, and Jacqueline Plumbridge. 2019. “Complex Synergistic Amino Acid-Nucleotide Interactions Contribute to the Specificity of NagC Operator Recognition and Induction.” Microbiology (Reading, England) 165 (7): 792–803. https://doi.org/10.1099/mic.0.000814.
Findinier, Justin, Cédric Delevoye, and Mickael M. Cohen. 2019. “The Dynamin-like Protein Fzl Promotes Thylakoid Fusion and Resistance to Light Stress in Chlamydomonas Reinhardtii.” PLoS Genetics 15 (3): e1008047. https://doi.org/10.1371/journal.pgen.1008047.
Gervason, Sylvain, Djabir Larkem, Amir Ben Mansour, Thomas Botzanowski, Christina S. Müller, Ludovic Pecqueur, Gwenaelle Le Pavec, et al. 2019. “Physiologically Relevant Reconstitution of Iron-Sulfur Cluster Biosynthesis Uncovers Persulfide-Processing Functions of Ferredoxin-2 and Frataxin.” Nature Communications 10 (1): 3566. https://doi.org/10.1038/s41467-019-11470-9.
Gnutt, David, Stepan Timr, Jonas Ahlers, Benedikt König, Emily Manderfeld, Matthias Heyden, Fabio Sterpone, and Simon Ebbinghaus. 2019. “Stability Effect of Quinary Interactions Reversed by Single Point Mutations.” Journal of the American Chemical Society 141 (11): 4660–69. https://doi.org/10.1021/jacs.8b13025.
Gurrieri, Libero, Alessandra Del Giudice, Nicola Demitri, Giuseppe Falini, Nicolae Viorel Pavel, Mirko Zaffagnini, Maurizio Polentarutti, et al. 2019. “Arabidopsis and Chlamydomonas Phosphoribulokinase Crystal Structures Complete the Redox Structural Proteome of the Calvin-Benson Cycle.” Proceedings of the National Academy of Sciences of the United States of America 116 (16): 8048–53. https://doi.org/10.1073/pnas.1820639116.
Hajj Chehade, Mahmoud, Ludovic Pelosi, Cameron David Fyfe, Laurent Loiseau, Bérengère Rascalou, Sabine Brugière, Katayoun Kazemzadeh, et al. 2019. “A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone.” Cell Chemical Biology 26 (4): 482-492.e7. https://doi.org/10.1016/j.chembiol.2018.12.001.
Jolivet, Pascale, Kamar Serhal, Marco Graf, Stephan Eberhard, Zhou Xu, Brian Luke, and Maria Teresa Teixeira. 2019. “A Subtelomeric Region Affects Telomerase-Negative Replicative Senescence in Saccharomyces Cerevisiae.” Scientific Reports 9 (1): 1845. https://doi.org/10.1038/s41598-018-38000-9.
Kanonenberg, Kerstin, Jorge Royes, Alexej Kedrov, Gereon Poschmann, Federica Angius, Audrey Solgadi, Olivia Spitz, et al. 2019. “Shaping the Lipid Composition of Bacterial Membranes for Membrane Protein Production.” Microbial Cell Factories 18 (1): 131. https://doi.org/10.1186/s12934-019-1182-1.
Laage, Damien, and Guillaume Stirnemann. 2019. “Effect of Ions on Water Dynamics in Dilute and Concentrated Aqueous Salt Solutions.” The Journal of Physical Chemistry. B 123 (15): 3312–24. https://doi.org/10.1021/acs.jpcb.9b01053.
Lamrabet, Otmane, Jacqueline Plumbridge, Mikaël Martin, Richard E. Lenski, Dominique Schneider, and Thomas Hindré. 2019. “Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene.” Molecular Biology and Evolution 36 (6): 1121–33. https://doi.org/10.1093/molbev/msz042.
Law-Hine, Didier, Sergii Rudiuk, Audrey Bonestebe, Romain Ienco, Sylvain Huille, and Christophe Tribet. 2019. “Distinctive Low-Resolution Structural Features of Dimers of Antibody-Drug Conjugates and Parent Antibody Determined by Small-Angle X-Ray Scattering.” Molecular Pharmaceutics, October. https://doi.org/10.1021/acs.molpharmaceut.9b00792.
Lejars, Maxence, Asaki Kobayashi, and Eliane Hajnsdorf. 2019. “Physiological Roles of Antisense RNAs in Prokaryotes.” Biochimie 164 (September): 3–16. https://doi.org/10.1016/j.biochi.2019.04.015.
Li, Chastity, Claudia Danilowicz, Tommy F. Tashjian, Veronica G. Godoy, Chantal Prévost, and Mara Prentiss. 2019. “The Positioning of Chi Sites Allows the RecBCD Pathway to Suppress Some Genomic Rearrangements.” Nucleic Acids Research 47 (4): 1836–46. https://doi.org/10.1093/nar/gky1252.
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Dumas, Louis, Francesca Zito, Stéphanie Blangy, Pascaline Auroy, Xenie Johnson, Gilles Peltier, and Jean Alric. 2017. “A Stromal Region of Cytochrome B6f Subunit IV Is Involved in the Activation of the Stt7 Kinase in Chlamydomonas.” Proceedings of the National Academy of Sciences, October, 201713343. https://doi.org/10.1073/pnas.1713343114.
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Eugene, Sarah, Thibault Bourgeron, and Zhou Xu. 2017. “Effects of Initial Telomere Length Distribution on Senescence Onset and Heterogeneity.” Journal of Theoretical Biology 413 (January): 58–65. https://doi.org/10.1016/j.jtbi.2016.11.010.
Fogeron, Thibault, Pascal Retailleau, Lise-Marie Chamoreau, Marc Fontecave, and Yun Li. 2017. “The Unusual Ring Scission of a Quinoxaline-Pyran-Fused Dithiolene System Related to Molybdopterin.” Dalton Transactions 46 (13): 4161–64. https://doi.org/10.1039/C7DT00377C.
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Huan, Tran Ngoc, Philippe Simon, Gwenaëlle Rousse, Isabelle Génois, Vincent Artero, and Marc Fontecave. 2017. “Porous Dendritic Copper: An Electrocatalyst for Highly Selective CO2 Reduction to Formate in Water/Ionic Liquid Electrolyte.” Chemical Science 8 (1): 742–47. https://doi.org/10.1039/c6sc03194c.
Jabrani, Amira, Staëlle Makamte, Emilie Moreau, Yasmine Gharbi, Anne Plessis, Lucia Bruzzone, Matthieu Sanial, and Valérie Biou. 2017. “Biophysical Characterisation of the Novel Zinc Binding Property in Suppressor of Fused.” Scientific Reports 7 (1): 11139. https://doi.org/10.1038/s41598-017-11203-2.
Jagodnik, Jonathan, Anaïs Brosse, Thao Nguyen Le Lam, Claude Chiaruttini, and Maude Guillier. 2017. “Mechanistic Study of Base-Pairing Small Regulatory RNAs in Bacteria.” Methods (San Diego, Calif.) 117 (March): 67–76. https://doi.org/10.1016/j.ymeth.2016.09.012.
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Joyet, Philippe, Abdelhamid Mokhtari, Eliette Riboulet-Bisson, Víctor S. Blancato, Martin Espariz, Christian Magni, Axel Hartke, Josef Deutscher, and Nicolas Sauvageot. 2017. “Enzymes Required for Maltodextrin Catabolism in Enterococcus Faecalis Exhibit Novel Activities.” Applied and Environmental Microbiology 83 (13): e00038-17. https://doi.org/10.1128/AEM.00038-17.
Katava, Marina, Guillaume Stirnemann, Marco Zanatta, Simone Capaccioli, Maria Pachetti, K. L. Ngai, Fabio Sterpone, and Alessandro Paciaroni. 2017. “Critical Structural Fluctuations of Proteins upon Thermal Unfolding Challenge the Lindemann Criterion.” Proceedings of the National Academy of Sciences of the United States of America, August. https://doi.org/10.1073/pnas.1707357114.
Katava, Marina, Marco Maccarini, Guillaume Villain, Alessandro Paciaroni, Michael Sztucki, Oxana Ivanova, Dominique Madern, and Fabio Sterpone. 2017. “Thermal Activation of ‘allosteric-like’ Large-Scale Motions in a Eukaryotic Lactate Dehydrogenase.” Scientific Reports 7 (January): 41092. https://doi.org/10.1038/srep41092.
Laurin, Yoann, Joel Eyer, Charles H. Robert, Chantal Prevost, and Sophie Sacquin-Mora. 2017. “Mobility and Core-Protein Binding Patterns of Disordered C-Terminal Tails in β-Tubulin Isotypes.” Biochemistry 56 (12): 1746–56. https://doi.org/10.1021/acs.biochem.6b00988.
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Ma, Miao, Ines Li de la Sierra-Gallay, Noureddine Lazar, Olivier Pellegrini, Dominique Durand, Anita Marchfelder, Ciarán Condon, and Herman van Tilbeurgh. 2017. “The Crystal Structure of Trz1, the Long Form RNase Z from Yeast.” Nucleic Acids Research 45 (10): 6209–16. https://doi.org/10.1093/nar/gkx216.
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Man, Viet Hoang, Phuong H. Nguyen, and Philippe Derreumaux. 2017. “High-Resolution Structures of the Amyloid-β 1-42 Dimers from the Comparison of Four Atomistic Force Fields.” The Journal of Physical Chemistry. B 121 (24): 5977–87. https://doi.org/10.1021/acs.jpcb.7b04689.
Martin, Nicolas, Narciso Costa, Frank Wien, Françoise M. Winnik, Céline Ortega, Amaury Herbet, Didier Boquet, and Christophe Tribet. 2017. “Refolding of Aggregation-Prone ScFv Antibody Fragments Assisted by Hydrophobically Modified Poly(Sodium Acrylate) Derivatives.” Macromolecular Bioscience 17 (2). https://doi.org/10.1002/mabi.201600213.
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Mazzanti, Liuba, Sébastien Doutreligne, Cedric Gageat, Philippe Derreumaux, Antoine Taly, Marc Baaden, and Samuela Pasquali. 2017. “What Can Human-Guided Simulations Bring to RNA Folding?” Biophysical Journal, June. https://doi.org/10.1016/j.bpj.2017.05.047.
Nawrocki, Wojciech, Benjamin Bailleul, Pierre Cardol, Fabrice Rappaport, Francis-Andre Wollman, and Pierre Joliot. 2017. “Cyclic Electron Flow in Chlamydomonas Reinhardtii.” BioRxiv, June, 153288. https://doi.org/10.1101/153288.
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Caserta, Giorgio, Agnieszka Adamska-Venkatesh, Ludovic Pecqueur, Mohamed Atta, Vincent Artero, Souvik Roy, Edward Reijerse, Wolfgang Lubitz, and Marc Fontecave. 2016. “Chemical Assembly of Multiple Metal Cofactors: The Heterologously Expressed Multidomain [FeFe]-Hydrogenase from Megasphaera Elsdenii.” Biochimica Et Biophysica Acta 1857 (11): 1734–40. https://doi.org/10.1016/j.bbabio.2016.07.002.
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Chiricotto, Mara, Thanh Thuy Tran, Phuong H. Nguyen, Simone Melchionna, Fabio Sterpone, and Philippe Derreumaux. 2016. “Coarse-Grained and All-Atom Simulations towards the Early and Late Steps of Amyloid Fibril Formation.” Israel Journal of Chemistry, August, n/a-n/a. https://doi.org/10.1002/ijch.201600048.
Chiricotto, Mara, Fabio Sterpone, Philippe Derreumaux, and Simone Melchionna. 2016. “Multiscale Simulation of Molecular Processes in Cellular Environments.” Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences 374 (2080). https://doi.org/10.1098/rsta.2016.0225.
Chiricotto, Mara, Simone Melchionna, Philippe Derreumaux, and Fabio Sterpone. 2016. “Hydrodynamic Effects on β-Amyloid (16-22) Peptide Aggregation.” The Journal of Chemical Physics 145 (3): 035102. https://doi.org/10.1063/1.4958323.
Dahmane, Narimane, Danièle Gadelle, Stéphane Delmas, Alexis Criscuolo, Stephan Eberhard, Nicole Desnoues, Sylvie Collin, et al. 2016. “TopIb, a Phylogenetic Hallmark Gene of Thaumarchaeota Encodes a Functional Eukaryote-like Topoisomerase IB.” Nucleic Acids Research 44 (6): 2795–2805. https://doi.org/10.1093/nar/gkw097.
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Fogeron, Thibault, Jean-Philippe Porcher, Maria Gomez-Mingot, Tanya K. Todorova, Lise-Marie Chamoreau, Caroline Mellot-Draznieks, Yun Li, and Marc Fontecave. 2016. “A Cobalt Complex with a Bioinspired Molybdopterin-like Ligand: A Catalyst for Hydrogen Evolution.” Dalton Transactions 45 (37): 14754–63. https://doi.org/10.1039/C6DT01824F.
Fontaine, Fanette, Elise Gasiorowski, Celine Gracia, Mathieu Ballouche, Joel Caillet, Antonin Marchais, and Eliane Hajnsdorf. 2016. “The Small RNA SraG Participates in PNPase Homeostasis.” RNA (New York, N.Y.) 22 (10): 1560–73. https://doi.org/10.1261/rna.055236.115.
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Frka-Petesic, B., D. Zanchi, N. Martin, S. Carayon, S. Huille, and C. Tribet. 2016. “Aggregation of Antibody Drug Conjugates at Room Temperature: SAXS and Light Scattering Evidence for Colloidal Instability of a Specific Subpopulation.” Langmuir 32 (19): 4848–61. https://doi.org/10.1021/acs.langmuir.6600653.
Goudy, Violaine, Jérôme Maynadié, Xavier Le Goff, Daniel Meyer, and Marc Fontecave. 2016. “Synthesis, Electrochemical and Spectroscopic Properties of Ruthenium( ii ) Complexes Containing 2,6-Di(1H-Imidazo[4,5-f][1,10]Phenanthrolin-2-Yl)Aryl Ligands.” New Journal of Chemistry 40 (2): 1704–14. https://doi.org/10.1039/C5NJ02280K.
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Hamdane, Djemel, Christophe Velours, David Cornu, Magali Nicaise, Murielle Lombard, and Marc Fontecave. 2016. “A Chemical Chaperone Induces Inhomogeneous Conformational Changes in Flexible Proteins.” Physical Chemistry Chemical Physics: PCCP 18 (30): 20410–21. https://doi.org/10.1039/c6cp03635j.
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Huan, Tran Ngoc, Philippe Simon, Anass Benayad, Laure Guetaz, Vincent Artero, and Marc Fontecave. 2016. “Cu/Cu2O Electrodes and CO2 Reduction to Formic Acid: Effects of Organic Additives on Surface Morphology and Activity.” Chemistry – A European Journal 22 (39): 14029–35. https://doi.org/10.1002/chem.201602618.
Huan, Tran Ngoc, Praveen Prakash, Philippe Simon, Gwenaëlle Rousse, X. Xu, Vincent Artero, Edmond Gravel, Eric Doris, and Marc Fontecave. 2016. “CO2 Reduction to CO in Water: Carbon Nanotube–Gold Nanohybrid as a Selective and Efficient Electrocatalyst.” ChemSusChem 9 (17): 2317–20. https://doi.org/10.1002/cssc.201600597.
Ismail, Alexandre, Vincent Leroux, Myriam Smadja, Lucie Gonzalez, Murielle Lombard, Fabien Pierrel, Caroline Mellot-Draznieks, and Marc Fontecave. 2016. “Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6.” PLoS Computational Biology 12 (1): e1004690. https://doi.org/10.1371/journal.pcbi.1004690.
Jagodnik, Jonathan, Denis Thieffry, and Maude Guillier. 2016. “Bacterial Small RNAs in Mixed Regulatory Circuits.” In Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, edited by Frans J. de Bruijn, 369–82. John Wiley & Sons, Inc. https://doi.org/10.1002/9781119004813.ch33.
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Laurent, Benoist, Samuel Murail, Azadeh Shahsavar, Ludovic Sauguet, Marc Delarue, and Marc Baaden. 2016. “Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel.” Structure (London, England: 1993) 24 (4): 595–605. https://doi.org/10.1016/j.str.2016.02.014.
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Malinge, Jeremy, Fanny Mousseau, Drazen Zanchi, Geoffrey Brun, Christophe Tribet, and Emmanuelle Marie. 2016. “Tailored Stimuli-Responsive Interaction between Particles Adjusted by Straightforward Adsorption of Mixed Layers of Poly(Lysine)-g-PEG and Poly(Lysine)-g-PNIPAM on Anionic Beads.” Journal of Colloid and Interface Science 461 (January): 50–55. https://doi.org/10.1016/j.jcis.2015.09.016.
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Nguyen, Phuong H., Fabio Sterpone, Ramon Pouplana, Philippe Derreumaux, and Josep M. Campanera. 2016. “Dimerization Mechanism of Alzheimer Aβ40 Peptides: The High Content of Intrapeptide-Stabilized Conformations in A2V and A2T Heterozygous Dimers Retards Amyloid Fibril Formation.” The Journal of Physical Chemistry. B 120 (47): 12111–26. https://doi.org/10.1021/acs.jpcb.6b10722.
Nguyen, Phuong H., Fabio Sterpone, Josep M. Campanera, Jessica Nasica-Labouze, and Philippe Derreumaux. 2016. “Impact of the A2V Mutation on the Heterozygous and Homozygous Aβ1-40 Dimer Structures from Atomistic Simulations.” ACS Chemical Neuroscience 7 (6): 823–32. https://doi.org/10.1021/acschemneuro.6b00053.
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Porcher, Jean-Philippe, Thibault Fogeron, Maria Gomez-Mingot, Lise-Marie Chamoreau, Yun Li, and Marc Fontecave. 2016. “Synthesis and Reactivity of a Bio-Inspired Dithiolene Ligand and Its Mo Oxo Complex.” Chemistry (Weinheim an Der Bergstrasse, Germany) 22 (13): 4447–53. https://doi.org/10.1002/chem.201504373.
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Stadlbauer, Petr, Liuba Mazzanti, Tristan Cragnolini, David J. Wales, Philippe Derreumaux, Samuela Pasquali, and Jiří Šponer. 2016. “Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes.” Journal of Chemical Theory and Computation 12 (12): 6077–97. https://doi.org/10.1021/acs.jctc.6b00667.
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